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527 lines
18 KiB
Plaintext
527 lines
18 KiB
Plaintext
1 year ago
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#!/usr/bin/env seiscomp-python
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from __future__ import print_function
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import os
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import sys
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from datetime import datetime
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from nettab.convertUtils import StationAttributes, NetworkAttributes, StationMappings, parseDate, formatDate, quote, hummanStr
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from nettab.tab import Tab
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from optparse import OptionParser
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from nettab.nodesi import Instruments
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class TabConverter:
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def __init__(self, networkCode):
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self.__fmt__ = None
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self.takeSugestions = None
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self.filename = None
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self.networkCode = networkCode
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self.stationList = None
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self.nat = None
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self.sat = None
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self.sma = None
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self.inst = None
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self.defaultEpoch = parseDate("1980/001")
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self.start=0
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self.code=0
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self.description=0
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self.datalogger=0
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self.sensor=0
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self.channel=0
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self.gaind = 0
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self.longitude=0
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self.latitude=0
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self.elevation=0
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self.end=0
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self.depth=0
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self.orientation=0
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## default dates
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self.startDate = parseDate("1980/001")
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self.endDate = parseDate(None)
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def loadStationMapping(self, filename):
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if self.networkCode is None: raise Exception("Cannot load Station mapping without network code")
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if self.stationList is None: raise Exception("Cannot load Station mapping without station list")
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try:
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sm = StationMappings(self.networkCode, self.stationList, filename)
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self.sma = sm
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except Exception as e:
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raise e
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def loadStationAttribute(self, filename):
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if self.networkCode is None: raise Exception("Cannot load Station att without network code")
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if self.stationList is None: raise Exception("Cannot load Station att without station list")
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try:
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sa = StationAttributes(self.networkCode, self.stationList, filename)
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self.sat = sa
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except Exception as e:
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raise e
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def loadNetworkAttribute(self, filename):
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if self.networkCode is None: raise Exception("Cannot load Network att without network code")
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if self.stationList is None: raise Exception("Cannot load Network att without station list")
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try:
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na = NetworkAttributes(self.networkCode, filename)
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self.nat = na
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except Exception as e:
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raise e
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def loadInstrumentsFile(self, filename, filterFolder):
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tab = Tab(filterFolder=filterFolder)
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tab.digest(filename)
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if tab.i:
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self.inst = tab.i
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def __fmtline__(self):
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if not self.__fmt__:
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fmt = "Sl: "
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fmt += "%%-%ds" % self.code
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fmt += " %%-%ds" % self.description
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fmt += " %%-%ds" % self.datalogger
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fmt += " %%-%ds" % self.sensor
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fmt += " %%-%ds" % self.channel
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fmt += " %%-%ds" % self.orientation
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fmt += " %%-%ds" % self.latitude
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fmt += " %%-%ds" % self.longitude
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fmt += " %%-%ds" % self.elevation
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fmt += " %%-%ds" % self.depth
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fmt += " %%-%ds" % self.start
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fmt += " %%-%ds" % self.end
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self.__fmt__ = fmt
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return self.__fmt__
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def __analyseLine__(self, items):
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inputLine = " ".join(items)
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if len(items) < 4:
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raise Exception("Invalid items count on line %s" % inputLine)
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if len(items) <= 5:
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netCode = items[2]
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if netCode != self.networkCode:
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raise Exception("Tab file (%s) doesn't match class (%s) -- %s" % (netCode,self.networkCode,inputLine))
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return [None, None, None]
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else:
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if len(items) < 6:
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raise Exception("Invalid Station line %s" % inputLine)
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stationCode = items.pop(0)
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code = len(stationCode)
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self.code=max(self.code,code)
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description = len(quote(hummanStr(items.pop(0))))
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self.description=max(self.description, description)
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datalogger = len(items.pop(0))
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self.datalogger=max(self.datalogger, datalogger)
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sensor = len(items.pop(0))
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self.sensor=max(self.sensor, sensor)
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# Gain
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gaind = items.pop(0)
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if float(gaind) != 1.0:
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self.datalogger = max (self.datalogger, datalogger + len(gaind))
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channel = len(items.pop(0))
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self.channel=max(self.channel, channel)
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latitude = len(items.pop(0))
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self.latitude=max(self.latitude, latitude)
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longitude = len(items.pop(0))
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self.longitude=max(self.longitude, longitude)
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elevation = len(items.pop(0))
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self.elevation=max(self.elevation, elevation)
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#Orientation
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depth = items.pop(0)
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try:
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float(depth)
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orientation="ZNE"
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except:
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orientation = "Z"
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(depth,a1,a2) = depth.split("/")
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a1n = float(a1)
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a2n = float(a2)
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orientation+="1"
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if a1n != 0.0: orientation += "(0.0,%s)"%a1
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orientation+="2"
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if a2n != 90.0: orientation+="(0.0,%s)"%a1
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orientation = len(orientation)
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self.orientation=max(self.orientation, orientation)
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depth = len(depth)
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self.depth=max(self.depth, depth)
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# Start
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try:
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start = parseDate(items.pop(0))
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self.start = max (self.start, len(formatDate(start)))
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except:
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raise Exception ("Invalid Station line start date %s" % inputLine)
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# End
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try:
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end = parseDate(items.pop(0))
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except:
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end=parseDate("")
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pass
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self.end = max (self.end, len(formatDate(end)))
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return [stationCode, start, end]
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def preload(self, filename, takeSugestions):
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self.takeSugestions = takeSugestions
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sugestedStart = datetime.now()
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sugestedEnd = self.defaultEpoch
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stationList = []
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error = []
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# Some initialization
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if self.filename is not None:
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raise Exception("Cannot pre-load two different files (current one is %s)" % self.filename)
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print("Analysing ... ", file=sys.stderr)
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fd = open(filename)
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for line in fd:
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line = line.strip()
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if not line or line[0] == "#": continue
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try:
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(stationCode, start, end) = self.__analyseLine__(line.split())
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except Exception as e:
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error.append(str(e))
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continue
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if not stationCode: continue
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if stationCode not in stationList:
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stationList.append(stationCode)
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sugestedStart = min(sugestedStart, start)
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if end and sugestedEnd:
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sugestedEnd = max(sugestedEnd, end)
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else:
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sugestedEnd = None
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fd.close()
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if len(error):
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raise Exception("\n".join(error))
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print(" Loaded %d different stations" % len(stationList), file=sys.stderr)
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if takeSugestions:
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print(" Taking suggestion start date of %s " % formatDate(self.startDate), file=sys.stderr)
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self.startDate = sugestedStart
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print(" Taking suggestion end date of %s " % formatDate(self.endDate), file=sys.stderr)
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self.endDate = sugestedEnd
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self.filename = filename
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self.stationList = stationList
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print("Done.", file=sys.stderr)
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def __convertHeader__(self, line, fdo):
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# Split line
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items = line.split()
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if not self.takeSugestions:
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if self.nat.hasStart:
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print(" Using start from attribute.", file=sys.stderr)
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self.startDate = self.nat.startDate
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if self.nat.hasEnd:
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print(" Using end from attribute.", file=sys.stderr)
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self.endDate = self.nat.endDate
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nCode = items[2].strip()
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if nCode != self.networkCode:
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raise Exception("Wrong network code found: %s != %s" % (self.networkCode, nCode))
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fdo.write("Nw: %s %s %s" % (nCode, formatDate(self.startDate), formatDate(self.endDate)) + "\n")
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self.nat.dump(fdo)
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def __convertLine__(self, line, fdo, atFront):
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lnfmt = self.__fmtline__()
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# Split line
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items = line.split()
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try:
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code = items.pop(0)
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except Exception as e:
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raise Exception ("Missing Code on %s" % line)
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if code not in self.stationList:
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raise Exception("Unknow station code $s" % code)
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try:
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hummanStr(items.pop(0))
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except Exception as e:
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raise Exception ("Missing Gain on %s" % line)
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try:
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datalogger = items.pop(0)
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except Exception as e:
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raise Exception ("Missing Datalogger on %s" % line)
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try:
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sensor = items.pop(0)
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except Exception as e:
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raise Exception ("Missing Sensor on %s" % line)
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try:
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gaind = items.pop(0)
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if float(gaind) != 1.0:
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if not self.inst:
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raise Exception("Instrument database needed to convert gain")
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try:
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dte = self.inst.dls[str(datalogger).split("%")[0]]
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except Exception as e:
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print(e, file=sys.stderr)
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raise Exception("Datalogger %s not found" % str(datalogger).split("%")[0])
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datalogger += "%%%s" % (float(dte.gain) * float(gaind))
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print(" Converting gain multiplier to real gain using instrument DB on %s" % code, file=sys.stderr)
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except Exception as e:
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raise Exception ("Missing Gain on %s (%s)" % (line,str(e)))
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try:
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channel = items.pop(0)
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except Exception as e:
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raise Exception ("Missing Channel on %s" % line)
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try:
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latitude = items.pop(0)
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except Exception as e:
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raise Exception ("Missing Latitude on %s" % line)
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try:
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longitude = items.pop(0)
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except Exception as e:
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raise Exception ("Missing Longitude on %s" % line)
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try:
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elevation = items.pop(0)
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except Exception as e:
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raise Exception ("Missing Elevation on %s" % line)
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try:
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depth = items.pop(0)
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except Exception as e:
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raise Exception ("Missing Depth on %s" % line)
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#Orientation
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try:
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float(depth)
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orientation = "ZNE"
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except:
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orientation = "Z"
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(depth,a1,a2) = depth.split("/")
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a1n = float(a1)
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if a1n == 0.0:
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orientation+="1"
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else:
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orientation+="1(0.0,%s)"%a1
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a2n = float(a2)
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if a2n == 90.0:
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orientation+="2"
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else:
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orientation+="2(0.0,%s)"%a2
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# Start
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try:
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start = items.pop(0)
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except Exception:
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raise Exception ("Missing Start on %s" % line)
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try:
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start = parseDate(start)
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except Exception as e:
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raise Exception("Invalide Start date: %s (%s) on %s" % (start, e, line))
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#End
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try:
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end = items.pop(0)
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except:
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end = ""
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try:
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end = parseDate(end)
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except Exception as e:
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raise Exception("Invalide End date: %s (%s) on %s" % (end, e, line))
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[place, country] = self.sat.parseStationLine(line.split())
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description = "%s/%s" % (place, country)
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## Prepare necessary output
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if not atFront:
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self.sma.dump(fdo, code)
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self.sat.dump(fdo, code)
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for (start, end) in self.sma.getMappings(code, start, end):
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fdo.write(lnfmt % (code, quote(description), datalogger, sensor, channel, orientation, latitude, longitude, elevation, depth, formatDate(start), formatDate(end)) + "\n")
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return code
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def convert(self, fdo, keepcomments = False, atFront = True):
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if self.filename is None:
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raise Exception("You should pre-load a tab file before before converting.")
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## Obtain additional attribute classes if needed
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if not self.nat:
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self.nat = NetworkAttributes(self.networkCode, None)
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if not self.sat:
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self.sat = StationAttributes(self.networkCode, self.stationList, None)
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if not self.sma:
|
||
|
|
self.sma = StationMappings(self.networkCode, self.stationList, None)
|
||
|
|
|
||
|
|
# Parse in again the station lines and network header by the additional classes
|
||
|
|
print("Pre-Parsing Station/Network lines ... ", file=sys.stderr)
|
||
|
|
fd = open(self.filename)
|
||
|
|
for line in fd:
|
||
|
|
line = line.strip()
|
||
|
|
if not line or line[0] == "#":
|
||
|
|
continue
|
||
|
|
items = line.split()
|
||
|
|
if len(items) <= 5:
|
||
|
|
self.nat.parseNetworkLine(items)
|
||
|
|
elif len(items) <= 12:
|
||
|
|
self.sma.parseStationLine(items)
|
||
|
|
self.sat.parseStationLine(items)
|
||
|
|
fd.close()
|
||
|
|
|
||
|
|
fd = open(self.filename)
|
||
|
|
oldcode="" # Station code of the last printed line
|
||
|
|
last="" # Type of the last printed line
|
||
|
|
print("Converting ... ", file=sys.stderr)
|
||
|
|
for line in fd:
|
||
|
|
line = line.strip()
|
||
|
|
if not line or line[0] == "#":
|
||
|
|
if last == "l" or last == "a" or last == "h": fdo.write("\n")
|
||
|
|
if keepcomments: fdo.write(line + "\n")
|
||
|
|
last = "c"
|
||
|
|
continue
|
||
|
|
items = line.split()
|
||
|
|
if len(items) <= 5:
|
||
|
|
self.__convertHeader__(line, fdo)
|
||
|
|
last = "h"
|
||
|
|
if (atFront):
|
||
|
|
fdo.write("\n")
|
||
|
|
self.sma.dump(fdo, None)
|
||
|
|
self.sat.dump(fdo, None)
|
||
|
|
last = "a"
|
||
|
|
fdo.write("\n")
|
||
|
|
elif len(items) <= 12:
|
||
|
|
if (last == "l" and items[0].strip() != oldcode) or last == "h": fdo.write("\n")
|
||
|
|
oldcode = self.__convertLine__(line, fdo, atFront)
|
||
|
|
last = "l"
|
||
|
|
pass
|
||
|
|
else:
|
||
|
|
print("input at %s" % line, file=sys.stderr)
|
||
|
|
fd.close()
|
||
|
|
|
||
|
|
def main():
|
||
|
|
# Creating the parser
|
||
|
|
parser = OptionParser(usage="Old tab to New tab converter", version="1.0", add_help_option=True)
|
||
|
|
|
||
|
|
parser.add_option("", "--instdb", type="string",
|
||
|
|
help="Indicates the instrument databases file to use", dest="inst", default=None)
|
||
|
|
parser.add_option("", "--smap", type="string",
|
||
|
|
help="Indicates the station attribute file to use", dest="smap", default=None)
|
||
|
|
parser.add_option("", "--sat", type="string",
|
||
|
|
help="Indicates the station attribute file to use", dest="sat", default=None)
|
||
|
|
parser.add_option("", "--nat", type="string",
|
||
|
|
help="Indicates the station attribute file to use", dest="nat", default=None)
|
||
|
|
parser.add_option("-t", "--tab", type="string",
|
||
|
|
help="Indicates the tab file to convert", dest="tabFile", default=None)
|
||
|
|
parser.add_option("-f", "--filterf", type="string",
|
||
|
|
help="Indicates a folder containing the filters coefficients files", dest="ffolder", default=None)
|
||
|
|
parser.add_option("-n", "--net", type="string",
|
||
|
|
help="Indicates a two leter station code", dest="netCode", default=None)
|
||
|
|
parser.add_option("-g", "--globalsa", action="store_true",
|
||
|
|
help="Indicate that we should put a condensed version of the station attributes just below the network definition", dest="globalSa", default=False)
|
||
|
|
parser.add_option("-a", "--autotime", action="store_true",
|
||
|
|
help="Guess the start and end times for a network from the channel times", dest="autoTime", default=False)
|
||
|
|
parser.add_option("-c", "--clean", action="store_true",
|
||
|
|
help="Remove the comments and blank lines", dest="cleanFile", default=False)
|
||
|
|
|
||
|
|
# Parsing & Error check
|
||
|
|
(options, args) = parser.parse_args()
|
||
|
|
error = False
|
||
|
|
|
||
|
|
if len(args) != 1:
|
||
|
|
print("need an Output Filename or '-' for stdout", file=sys.stderr)
|
||
|
|
error = True
|
||
|
|
|
||
|
|
if not options.tabFile:
|
||
|
|
print("tab file name not supplied", file=sys.stderr)
|
||
|
|
error = True
|
||
|
|
|
||
|
|
if options.inst and not options.ffolder:
|
||
|
|
print("Filter folder not supplied.", file=sys.stderr)
|
||
|
|
error = True
|
||
|
|
|
||
|
|
if options.tabFile and not os.path.isfile(options.tabFile):
|
||
|
|
print("supplied tab file (%s) is not a file" % options.tabFile, file=sys.stderr)
|
||
|
|
error = True
|
||
|
|
|
||
|
|
if not options.netCode:
|
||
|
|
print("network code not supplied", file=sys.stderr)
|
||
|
|
error = True
|
||
|
|
|
||
|
|
#if options.autoTime and (options.netStart or options.netEnd):
|
||
|
|
# print >> sys.stderr, "options Auto Time and Network Start/End times are exclusive"
|
||
|
|
# return
|
||
|
|
|
||
|
|
if error:
|
||
|
|
print("use -h for getting a help on usage", file=sys.stderr)
|
||
|
|
return
|
||
|
|
|
||
|
|
if args[0] != "-":
|
||
|
|
fdo = open(args[0], "w")
|
||
|
|
else:
|
||
|
|
fdo = sys.stdout
|
||
|
|
|
||
|
|
# Execution
|
||
|
|
try:
|
||
|
|
cnv = TabConverter(options.netCode.upper())
|
||
|
|
cnv.preload(options.tabFile, options.autoTime)
|
||
|
|
|
||
|
|
if options.inst or options.smap or options.nat or options.sat:
|
||
|
|
print("Loading optional files: ", file=sys.stderr)
|
||
|
|
|
||
|
|
if options.inst and os.path.isfile(options.inst):
|
||
|
|
cnv.loadInstrumentsFile(options.inst, options.ffolder)
|
||
|
|
|
||
|
|
if options.smap and os.path.isfile(options.smap):
|
||
|
|
cnv.loadStationMapping(options.smap)
|
||
|
|
|
||
|
|
if options.nat and os.path.isfile(options.nat):
|
||
|
|
cnv.loadNetworkAttribute(options.nat)
|
||
|
|
|
||
|
|
if options.sat and os.path.isfile(options.sat):
|
||
|
|
cnv.loadStationAttribute(options.sat)
|
||
|
|
print("Done.", file=sys.stderr)
|
||
|
|
|
||
|
|
cnv.convert(fdo, not options.cleanFile, options.globalSa)
|
||
|
|
except Exception as e:
|
||
|
|
print("", file=sys.stderr)
|
||
|
|
print("Error on processing: %s" % e, file=sys.stderr)
|
||
|
|
|
||
|
|
fdo.close()
|
||
|
|
|
||
|
|
if __name__ == "__main__":
|
||
|
|
main()
|